Complete story — includes the ending
Having learned with Auggie that the dog walker is a former McQuaid employee, Annie resigns from the CIA and takes up McQuaid's offer of a job. With Auggie's help she is soon able to copy the files on McQuaid's computer, and they find that several former McQuaid employees including Borz are part of an organization called "Flint". McQuaid then tells Annie, before being asked, that Flint does covert operations for the DoD outside of McQuaid's main company. Arthur is able to more or less verify this for Annie, and also provide an address linked to Flint. There Annie finds a deserted factory, and as she begins to investigate a basement she is met by Caitlyn, who says she followed her there to protect the company from her spying. They both go downstairs where they are attacked by two men; Caitlyn kills one and the other escapes. Arthur, Caitlyn, and Annie then examine the basement, find signs of a recent explosion, and conclude that it was used to plan the Chicago bombing. They tell Calder and Joan, who order McQuaid's arrest. That night McQuaid comes to Annie's apartment, tipped off about the manhunt. Held at gunpoint by Annie, he tells her to trust her instincts and either shoot him or let him go. She chooses the latter, and then lies to Auggie about having seen him. Calder learns that Auggie falsified Annie's medical records, but declines to pursue the matter after Auggie and Annie's suspicions are vindicated.
Sources and content license
Source and revision history · Adapted from Wikipedia contributors, List of Covert Affairs episodes. HTML formatting and reference markers removed. · Content license